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Whole Wheat Chocolate Chip Cookies on a plate next to a glass of milk.

Whole Wheat Chocolate Chip Cookies

Kristen Stevens
By: Kristen Stevens
Updated: 09/27/2023
4.9 stars (42 ratings)
12 Comments
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This post may contain affiliate links. Please read our disclosure policy.

These are the ultimate whole wheat chocolate chip cookies! They’re moist and chewy in the center, with crispy edges, and incredible flavor. They’re easy to make from scratch with simple ingredients, and they’re ready in under an hour!

Whole Wheat Chocolate Chip Cookies on a plate next to a glass of milk.

This whole wheat chocolate chip cookie recipe is a longtime favorite in my kitchen. The cookies are chewy and tender with just the right amount of golden crunch around the edges, and they’re loaded with melty chocolate chips. The whole wheat flour doesn’t just make them heartier—it adds a subtle nuttiness and depth of flavor that makes these cookies especially satisfying.

It’s one of those simple, reliable recipes I come back to again and again, using ingredients I almost always have on hand. These are the kind of cookies that work anytime a sweet craving hits, whether that’s a casual afternoon treat or a late-night bake.

They also freeze beautifully, which means I can stash some away and bake a fresh batch whenever the mood strikes. Warm from the oven or straight from the freezer stash, these whole wheat chocolate chip cookies never disappoint.

A spatula lifting a Whole Wheat Chocolate Chip Cookie off of a pan.
A hand holding a chocolate chip whole wheat cookie with a bite out of it.

Freezing instructions

Freezing this cookie dough is simple and works beautifully if you want cookies on demand. Prepare the dough according to the recipe, then scoop it into individual portions on a parchment-lined baking sheet. Freeze the dough balls for about an hour, just until they’re firm, then transfer them to a freezer-safe container or reusable bag. They’ll keep well for up to three months and can be thawed at room temperature when you’re ready to bake.

You can also freeze the cookies after they’re baked. Once the cookies have cooled completely, place them in a freezer-safe container or bag and freeze for up to three months. When a craving hits, let them thaw at room temperature or warm them briefly in the microwave for that fresh-baked taste.

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4.91 stars (42 ratings)
Whole Wheat Chocolate Chip Cookies on a plate next to a glass of milk.

Whole Wheat Chocolate Chip Cookies Recipe

Prep: 15 minutes mins
Chill Time: 30 minutes mins
Cook: 10 minutes mins
Total: 55 minutes mins
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These are the ultimate whole wheat chocolate chip cookies! They're moist and chewy in the center, with crispy edges, and incredible flavor. They're easy to make from scratch with simple ingredients, and they're ready in under an hour!
12

Ingredients

  • ½ cup salted butter (softened)
  • ½ cup granulated sugar
  • ¼ cup brown sugar
  • 1 tablespoon vanilla
  • 1 large egg
  • 1 ½ cups whole wheat flour
  • ½ teaspoon baking powder
  • ¼ teaspoon salt
  • ½ cup chocolate chips (plus a few extra on top)

Instructions 

  • Line a baking sheet with parchment paper. Put the butter into a large bowl and microwave it for 30 seconds – see notes.
    ½ cup salted butter
    image for recipe instruction
  • Add both the sugars to the butter and beat with electric beaters for 1 minute. Mix in the egg and vanilla.
    ½ cup granulated sugar, ¼ cup brown sugar, 1 tablespoon vanilla, 1 large egg
    image for recipe instruction
  • In a medium-sized bowl, whisk the flour, baking powder, and salt. Add this to the wet ingredients and mix just until it's combined – do not overmix. Fold in the chocolate chips.
    1 ½ cups whole wheat flour, ½ teaspoon baking powder, ¼ teaspoon salt, ½ cup chocolate chips
    image for recipe instruction
  • Roll 12 balls of dough and place them on the baking sheet – see notes. Press a few extra chocolate chips onto the top, if you'd like. Put the baking sheet into your fridge for half an hour.
    image for recipe instruction
  • Preheat your oven to 350 degrees. Put the chilled cookies into your oven and bake for 8-10 minutes, or until puffed up and ever so slightly starting to color. Let them cool for 10 minutes before moving them to a cooling rack.
    image for recipe instruction

Video

Notes

The butter should be nice and soft, but not completely melted. The time it needs in the microwave will depend on how soft it is to start. Room-temperature butter needs 25-30 seconds to soften while butter from the fridge will take 40-45 seconds. See the picture to know exactly what the butter should look like!
Unless your baking sheet is very dark, you don’t need to line it with parchment paper. We do as our pans are well-used and not the prettiest to look at.

Nutrition

Serving: 1 cookie, Calories: 177kcal (9%), Carbohydrates: 24g (8%), Protein: 3g (6%), Fat: 8g (12%), Saturated Fat: 5g (31%), Polyunsaturated Fat: 1g, Monounsaturated Fat: 2g, Trans Fat: 0.3g, Cholesterol: 36mg (12%), Sodium: 135mg (6%), Potassium: 70mg (2%), Fiber: 2g (8%), Sugar: 13g (14%), Vitamin A: 260IU (5%), Calcium: 24mg (2%), Iron: 1mg (6%)
© Author Kristen Stevens

We have thoroughly tested this recipe for accuracy. However, individual results may vary. See our full recipe disclosure here.

Whole Wheat Chocolate Chip Cookies on a plate next to a glass of milk.

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A close up of a plate of whole wheat cookies with chocolate chips.

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Kristen Stevens

Kristen Stevens

Hi, I'm Kristen! I LOVE everything to do with food: making it, taking pictures of it, and (the best part) eating it. ♡♡♡

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Posted: 01/11/2023 Updated: 09/27/2023
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12 Comments
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Banana
Banana

5 stars
This recipe turned out amazing!! It is super important that you spoon the flour into the measuring cups, used softened butter, and refrigerate the cookie dough balls for at least 30 min!

I needed to bake them for 10-12 minutes bc they were not fully cooked enough. Cookies turned out soft & chewy even a day after baking so I will be using this recipe again!

0
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Kristen Stevens
Kristen Stevens
Reply to  Banana

So happy to hear that the recipe was a hit!

0
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Jagjeet
Jagjeet

Why my cookies didn’t flatten down when cooked 

1
Reply
Kristen Stevens
Kristen Stevens
Reply to  Jagjeet

Cookies don’t flatten when there is too much flour. Make sure to use the spoon and level technique when measuring flour so you don’t get too much in your cup!

0
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Elizabeth
Elizabeth

What is the measurement for the chocolate chips? I don’t see it in the ingredient list or instructions. Thank you!

0
Reply
Kristen Stevens
Kristen Stevens
Reply to  Elizabeth

Thanks for the heads up about that! We use ½ cup of chocolate chips plus a few extra to put on top of each cookie.

0
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Liz
Liz

5 stars
I have a very picky toddler so I’m always looking for little ways to make things they’ll eat! These cookies were perfect!

0
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Gina Abernathy
Gina Abernathy

5 stars
So easy and tasty. You can’t go wrong with chocolate chip cookies!

0
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sarah
sarah

5 stars
Way better than old fashioned but tasted so good!

0
Reply
Irena
Irena

5 stars
I haven’t baked much with whole wheat flour so didn’t know what the texture or flavor would be like. The texture was great, just like any other good cookie. The flavor was very similar to regular cookies so if you want a slightly better version, the kids won’t know the difference.

0
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Darlene Scholten
Darlene Scholten

Definitely not a diabetic cookie. Way too high in carbs.

0
Reply
Kristen Stevens
Kristen Stevens
Reply to  Darlene Scholten

You’re right, this isn’t a cookie suitable for a diabetic. If you’re looking for a sugar-free cookie, you can try our keto snowball cookies.

0
Reply

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Welcome!

Hi, I'm Kristen Stevens

I’m a self-taught chef, food photographer, and author of the cookbook Sugar Free Dinner Recipes. Since 2011, I have been sharing my well-tested and approachable recipes, helping home cooks like you feel comfortable and confident in the kitchen. My work has been featured in Food & Wine, Pioneer Woman, The Every Girl, Self, and many more. Let’s have some fun cooking together!

Learn more!

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