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A closeup of a plate of Chocolate Almond Thumbprint Cookies.

Chocolate Almond Thumbprint Cookies

Kristen Stevens
By: Kristen Stevens
Updated: 03/10/2026
4.9 stars (27 ratings)
16 Comments
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This post may contain affiliate links. Please read our disclosure policy.

Chocolate Almond Thumbprint Cookies are the ultimate treat. They’re soft like shortbread, filled with chocolate, and are made without grains or refined sweeteners.

Chocolate Almond Thumbprint Cookies on a tray with coconut sprinkled over top of them.

Are you ready for an amazing cookie recipe? Because these almond thumbprint cookies are it. They’re rich, buttery, and feel totally indulgent — and let’s just agree to keep it quiet that they’re made with good-for-you ingredients. That can be our little secret.

I learned pretty quickly that not mentioning almond flour is the way to go. After watching someone polish off a couple and rave about how good they were, then revealing the ingredients, I can confirm these cookies pass the most important test: they’re just plain delicious. Soft and shortbread-like, lightly sweet (without being cloying), and filled with dreamy melted dark chocolate.

They’re also dangerously easy to make and endlessly adaptable. Dress them up with seasonal sprinkles, keep them simple, make them vegan, paleo, gluten-free — they do it all. But honestly, none of that matters as much as this: they taste incredible, and it’s very hard to stop at one.

And once you’ve finished making these almond thumbprint cookies, also try our buttery, whipped shortbread cookies!

Spooning chocolate into Chocolate Almond Thumbprint Cookies.
Chocolate Almond Thumbprint Cookies on a tray.

Chocolate thumbprint cookies variations

This recipe is super easy to tweak to make your own fun creations. Here are a few ideas to get you going:

  • Peppermint: add a few drops of peppermint oil to the chocolate
  • Candy cane: sprinkle the tops with crushed candy canes
  • Extra almond: add a few drops of almond extract to the dough and sprinkle the tops with toasted sliced almonds
  • Orange: Add orange extract to the chocolate and decorate with candied orange peels.

Which variation do you want to try first?

Tap stars to rate!
4.89 stars (27 ratings)
A closeup of a plate of Chocolate Almond Thumbprint Cookies.

Chocolate Almond Thumbprint Cookies Recipe

Prep: 10 minutes mins
Cook: 10 minutes mins
Total: 20 minutes mins
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Chocolate Almond Thumbprint Cookies are the ultimate treat. They're soft like shortbread, filled with chocolate, and are made without grains or refined sweeteners.
12

Ingredients

  • 1 ½ cups almond flour
  • ¼ cup coconut sugar
  • 2 tablespoons tapioca starch
  • A pinch of sea salt
  • ¼ cup softened butter (or vegan butter, if needed)
  • 2 teaspoons vanilla
  • ¼ cup dark chocolate chips (paleo or vegan, as needed)
  • 2 teaspoons coconut oil
  • Shredded coconut (to garnish)

Instructions 

  • Preheat your oven to 350 degrees.
  • In a medium-sized bowl, whisk the almond flour, coconut sugar, tapioca starch, and salt. Add the butter and vanilla and mix until a dough forms. I find using my hands is easiest.
    1 ½ cups almond flour, ¼ cup coconut sugar, 2 tablespoons tapioca starch, A pinch of sea salt, ¼ cup softened butter, 2 teaspoons vanilla
  • Roll into 12 balls and place them on a baking sheet. Make an indent in each with your thumb.
  • Bake in the oven for 10 minutes. When you remove them from the oven, you may need to push the indents in a little with a spoon. Let them cool for 5 minutes then transfer the cookies to a cooling rack to cool completely.
  • Melt the chocolate with the coconut oil over low heat. Pour the chocolate into the thumbprints then sprinkle a little coconut on top. Let the chocolate set before storing the cookies.
    ¼ cup dark chocolate chips, 2 teaspoons coconut oil, Shredded coconut

Nutrition

Serving: 1 cookie, Calories: 156kcal (8%), Carbohydrates: 9g (3%), Protein: 3g (6%), Fat: 13g (20%), Saturated Fat: 5g (31%), Polyunsaturated Fat: 1g, Monounsaturated Fat: 1g, Trans Fat: 1g, Cholesterol: 10mg (3%), Sodium: 48mg (2%), Potassium: 26mg (1%), Fiber: 2g (8%), Sugar: 4g (4%), Vitamin A: 119IU (2%), Vitamin C: 1mg (1%), Calcium: 42mg (4%), Iron: 1mg (6%)
© Author Kristen Stevens

We have thoroughly tested this recipe for accuracy. However, individual results may vary. See our full recipe disclosure here.

A closeup of a plate of Chocolate Almond Thumbprint Cookies.

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A hand holding a Chocolate Almond Thumbprint Cookies with a bite taken out of it.
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Kristen Stevens

Kristen Stevens

Hi, I'm Kristen! I LOVE everything to do with food: making it, taking pictures of it, and (the best part) eating it. ♡♡♡

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Posted: 02/12/2019 Updated: 03/10/2026
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16 Comments
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Alexandra
Alexandra

Can cornstarch be used instead if cornstarch?

0
Reply
Kristen Stevens
Kristen Stevens
Reply to  Alexandra

Are you asking if cornstarch can be used instead of tapioca starch? If you are, yes it can be.

1
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prefer not to give
prefer not to give

Hello, is the raising agent (baking powder or bicarbonate of soda/baking soda) missing from the recipe?

0
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Kristen Stevens
Kristen Stevens
Reply to  prefer not to give

We use baking powder!

0
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Jan
Jan
Reply to  Kristen Stevens

There is NO baking powder in the recipe. No raising agent in the recipe at all. is this correct?

0
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Kristen Stevens
Kristen Stevens
Reply to  Jan

That’s correct!

0
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Lois Fowler
Lois Fowler

Hi, These cookies look amazing. I haven’t quite enough of almond flour, so do you think I could use some coconut flour as well?

0
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Kristen Stevens
Kristen Stevens
Reply to  Lois Fowler

Coconut flour does act quite differently than almond flour. If it’s just a little you’re missing, I would simply add a smidge less of the other ingredients. 🙂

0
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Lois Fowler
Lois Fowler
Reply to  Kristen Stevens

Thanks, that is a good plan. I will give a smaller batch a try. Happy holidays!

0
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Kristen Stevens
Kristen Stevens

They are! They’re my favorite cookies!!

0
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Kristen Stevens
Kristen Stevens

I’m so happy to hear they were a hit! Hooray!!

0
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Amela
Amela

Can I substitute vegetable oil for butter?
I can’t have dairy and forgot to get vegan butter.

Thank you

0
Reply
Kristen Stevens
Kristen Stevens
Reply to  Amela

I haven’t tried this recipe with vegetable oil and I’m not certain they will hold together with it. Maybe try a very small batch to test it?

0
Reply
Aprille R
Aprille R

Thank you for making a cookie recipe without egg! I have an egg allergy and so it’s hard for me to find and make baked paleo goods. I’m excited for this recipe!

0
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Kimberly Roberts
Kimberly Roberts

No almond flour 🙁 Would regular unbleached flour be an equal substitute? Also, what is tapioca starch used for? Thank you!

0
Reply
Kristen Stevens
Kristen Stevens
Reply to  Kimberly Roberts

I haven’t tried the recipe with regular flour, but I suspect it would work. The tapioca is in the recipe to make the cookies extra soft. Similar to how cornstarch is often added to shortbread cookies. 🙂

0
Reply

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Welcome!

Hi, I'm Kristen Stevens

I’m a self-taught chef, food photographer, and author of the cookbook Sugar Free Dinner Recipes. Since 2011, I have been sharing my well-tested and approachable recipes, helping home cooks like you feel comfortable and confident in the kitchen. My work has been featured in Food & Wine, Pioneer Woman, The Every Girl, Self, and many more. Let’s have some fun cooking together!

Learn more!

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